PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933462.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 677aa    MW: 73021.5 Da    PI: 5.4475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933462.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13497542454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YIk+L
  XP_010933462.1 497 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYIKEL 542
                     799***********************6.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-5665247IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.803493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-15496547No hitNo description
SuperFamilySSF474593.01E-19496565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10497542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-19497564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-17499548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MNLWADDNAS MMEAFMASTT DLQGFPWAPP PAAAAAGGGQ VPSPQSAVTS SAPAAPPAYF  60
NQETLQRRLL TVIEGARETW TYAIFWQSSV DVASGASLLG WGDGYYKGCE EDKRKQKANA  120
SAEEQEHRKR VLRELNSLIS GGAAGSSPDE AVEEEVTDTE WFFLVSMTQS FVDGAGLPGQ  180
ALFSESPTWI TGANLLAMAP CERARQAQVF GLQTMVCVPV GSGVLELGST DLIYQNFELM  240
NKIRVLFNFN GLDVPSGSWL LPPAATPAVA DHGETDPSVL WLADPSMVEI KDSVSPVSAT  300
AEISVTKPPI QFDNPSSSTI TESPSSVPMQ QRHNQQQQQN QNSNGNSNFQ TQSFGNKGFN  360
FSEFVMNGSA APSSFKPETG EILNFGNSKR NSSPTPGSGL FPHHQTAPDD KKNKRSTGAT  420
SRGSIDEGML SFSSAPARPS SAGPVKSGGG ILGGGDSDHS DLEASVREVE SGRVVEPEKR  480
PRKRGRKPAN GRSEPLNHVE AERQRREKLN QRFYALRAVV PNVSKMDKAS LLGDAISYIK  540
ELTSKLETLE SDKEGLQAQI ETLKTERDSA PARPSQPPDP DTRLMNGGRC HGVEIEVKTL  600
GLEAMIRVQC HKTNHPAARL MAALKDLDLD VHYASVSVVK DLMIQQATVK MSGRVYTQEQ  660
LSAGLFARVA DPTSNNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-66602504195Transcription factor MYC3
4rqw_B7e-66602504195Transcription factor MYC3
4rs9_A7e-66602504195Transcription factor MYC3
4yz6_A7e-66602504195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478486KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933462.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0G2RLM20.0A0A0G2RLM2_9ASPA; MYC transcription factor
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-74bHLH family protein